If a court of limited jurisdiction case with multiple charges has any of the charges dismissed, will the dismissed charges print on a warrant?

No.  Dismissed charges do not print on warrants for courts of limited jurisdiction. The JIS Online Manual, Warrant Eligibility Report topic, includes the following selection criteria: 

Case has at least one charge with a Finding/Judgment of BLANK, AS, DP, DS, G, GD, GO, GS, OD, PI, or RP. 

Since the dismissed finding/judgment codes (D, DW, DO) are not included in the selection criteria, they are not included on the printed warrant.

RN id: 887